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Great Plains Laboratory
© 2001 All Rights Reserved

Autism/PDD

1996 Autism Society National Conference Proceedings

What follows are proceedings from the Autism Society's national conference held July 10-13, 1996 in Milwaukee, Wisconsin. The material included here addresses some of the scientific and technical issues relevant in organic acid testing for children with autism.

Experience with Organic Acid Testing to Evaluate Abnormal Microbial Metabolites in the Urine of Children With Autism

For the past two years, we have evaluated by gas-chromatography mass-spectrometry biochemical abnormalities that appear to be of microbial origin in urine samples of children with autism and other developmental disorders. Our interest in this phenomenon began when we found that certain putative microbial metabolites appeared in higher than normal values in urine samples of two brothers with autism (1).

These findings were of especial interest to us because of a report that autistic children have a greater incidence of ear infections than age-matched peers; that lower functioning autistic children had an earlier onset of ear infections than their higher functioning autistic peers; and that the ears of children with autism were anatomically positioned differently than those of normal children, perhaps leading to greater ear infection susceptibility (2). Intestinal overgrowth of yeast and anaerobic bacteria are well documented sequelae of the common oral antibiotics used to treat ear infections (3-10).

Therefore we considered the possibility that the biochemical products of abnormal microorganisms may play a role in the etiology of autism just as abnormal elevations of phenylalanine and its metabolites cause PKU. Certain of the metabolites that had been previously identified in urine samples include tartaric and citramalic acids. Other compounds that we identified for the first time in urine samples included arabinose(a carbohydrate), 3-methylmalic acid, 3-oxoglutaric acid, phenylcarboxylic acid, and carboxycitric acid (1).

Since that time we have identified several additional compounds as commonly increased in the urine samples of children with autism including dihydroxyphenylpropionic acid, furandicarboxylic, hydroxymethylfuroic, and furancarbonylglycine. We suspected that most of the above compounds were of microbial origin based on reports that demonstrated the presence of these compounds or closely related biochemicals in the culture media of yeast,fungi ,or bacteria (1, 11-13).

During this period of time, we have gathered information about these compounds and their possible role in autism:

  1. By conducting a formal uncontrolled clinical trial of antifungal drug therapy which involved 23 children with autism who were seen as outpatients at the hospital;
  2. By offering reference laboratory testing to physicians who used this testing to evaluate possible standard inborn errors of metabolism as well as putative abnormal microbial metabolites;
  3. By testing culture media of different microorganisms to determine which compounds were produced by different species.

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Antifungal Clinical Trial

A research proposal was drafted to determine:

  1. if the urinary excretion of abnormal Krebs cycle metabolites and/or abnormal carbohydrates are biochemical characteristics in autistic children and
  2. if antifungal treatment results in decrease or elimination of abnormal Krebs cycle metabolites, metabolites such as dihydroxyphenylpropionic acid,phenylcarboxylic acid, and/or carbohydrates in autistic children and/r improvement in autistic symptoms.

The study was approved by the Investigational Review Board Of Children’s Mercy Hospital. Funding for the studies was provided by grants from the Katherine B. Richardson Foundation , from Pfizer Pharmaceutical Corporation, and the parents of an autistic child.

Twenty-three autistic children were enrolled for the study. Each child was classified as autistic according to the latest criteria proposed by the American Psychiatric Association DSM-IV (1994). After informed consent, a random urine sample was collected without special preparation for organic acid analysis by gas chromatography/mass spectrometry.

If the urine showed the presence of abnormal Krebs cycle metabolites and/or elevated abnormal carbohydrates , the child was offered treatment of suspected yeast infection with Mycostatin (NystatinS) 100,000 units q.i.d. orally for 10 days and another random urine sample obtained and analyzed for organic acids. If the second urine sample still showed the presence of abnormal metabolites, the child was offered a second course of treatment with Mycostatin for 2 months and another urine sample tested. If this still showed abnormal organic acids, the child was offered to enter treatment with fluconazole (Diflucan) 2 mg/kg/day as a single dose daily for 2 weeks. A second two-week course of treatment was offered if abnormal metabolites were still present in the urine and liver function was satisfactory based on serum transaminase activities before and after fluconazole therapy. A random urine sample was obtained two weeks later and analyzed for organic acids. An additional urine sample was collected four weeks after the end of therapy to determine the duration of any biochemical normality associated with drug therapy.

Each of the patient's baseline urine values served as controls. Urine from 20 normal children of laboratory employees served as additional normal controls. An additional 50 normal controls have been collected and data will be available for the meeting. An assessment of the severity of autistic behaviors was done by both a staff psychologist working with a parent and by a teacher (if child was in school or preschool) using the CARS scale (Childhood Autism Rating Scale) This assessment was done twice: prior to starting therapy and at the end of therapy. The use of two evaluators was employed to increase the reliability of this test. Furthermore, parents and teachers are the individuals who have usually observed the child longer than any other people.

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Effect of Nystatin Therapy

The Table below demonstrates the changes in urine organic acids following 10 days of therapy with Mycostatin.

Table 1 - Effect of 10 Days of Nystatin Therapy on Urinary Organic Acids from Children with Autism
Baseline Nystatin-1
Compounds Avg Median SD Avg % Decrease Mean Median SD TTest Paired
Citramalic 3.95 1.70 5.52 2.52 36.3 1.40 3.57 0.15
5-OH-methyl-2-furoic* 139.13 58.00 181.37 56.59 59.3 16.50 129.74 0.05
3-Oxo-glutaric 0.54 0.00 69.31 0.22 60.0 0.00 0.94 0.16
Furan-2,5-dicarboxylic * 55.77 26.00 75.94 16.87 69.8 10.00 19.64 0.01
Tartaric 27.51 4.20 72.80 15.31 44.3 1.80 45.81 0.06
Furancarbonyl glycine* 58.88 41.00 77.53 45.54 22.7 12.00 88.73 0.31
Arabinose 384.36 271.00 480.31 178.95 53.4 126.00 145.28 0.04
Dihydroxyphenyl-propionic 147.00 99.00 158.52 131.87 10.3 131.00 85.16 0.34
Isocitric analog* 21.80 14.00 20.85 13.64 37.4 12.00 9.11 0.07
VMA analog* 16.07 6.50 24.47 9.24 42.5 8.20 8.49 0.13
Carboxycitric* 31.45 9.80 65.89 18.26 41.9 6.30 27.85 0.22
Phenylcarboxylic* 24.33 8.70 30.69 46.06 -89.3 14.00 57.04 0.05
Indole compound* 54.67 45.00 61.17 25.52 53.3 15.00 27.25 0.02

* Compounds indicated (with an asterisk) are in units/mol creatinine; the others are mmol/mol creatinine.

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As indicated in Table 1, the mean values of all of the above compounds with the exception of the phenylcarboxylic acid compound decreased following 10 days of Nystatin therapy. The mean value of the phenylcarboxylic compound actually increased by 89.3% following Nystatin therapy (p=0.05 by paired t-test).

The percent decrease for dihydroxyphenylpropionic acid and furancarbonylglycine is relatively small and is or marginal statistical significance. The percent decrease for the additional compounds is larger (36.3-69.8%) with greater degrees of statistical significance by the paired t-test. Please note that four of the patient results are not included since these results were late arriving but will be included in the final analysis.

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Table 2 - Effect of 70 Days of Nystatin Therapy on Urinary Organic Acids from Children with Autism
Baseline Nystatin-1
Compounds Avg Median SD Avg % Decrease Mean Median SD TTest Paired
Citramalic 4.69 1.60 6.33 2.82 39.90 2.00 2.19 0.13
5-OH-methyl-2-furoic* 115.00 56.00 118.6 47.05 59.00 23.50 69.81 0.02
3-Oxo-glutaric 0.66 0.00 1.15 0.97 -47.00 0.00 2.47 0.29
Furan-2,5-dicarboxylic * 54.7 29.50 71.30 24.54 55.20 12.50 31.67 0.05
Tartaric 36.3 6.85 83.76 4.39 87.90 1.70 7.76 0.07
Furancarbonyl glycine* 73.6 55.5 85.39 39.49 46.30 23.50 42.07 0.09
Arabinose 412 276.5 543.4 212.8 48.30 154.50 184.74 0.13
Dihydroxyphenyl-propionic 186 141.00 167.0 165.2 11.80 128.50 130.76 0.36
Isocitric analog* 24.9 18.00 22.31 14.71 41.20 11.00 11.44 0.07
VMA analog* 20.4 8.65 27.32 23.79 -16.70 8.75 39.23 0.38
Carboxycitric* 41.0 19.50 75.00 13.32 67.60 2.60 23.89 0.11
Phenylcarboxylic* 27.5 18.00 33.91 46.81 -69.60 8.65 88.61 0.16
Indole compound* 59.4 48.00 56.36 30.09 46.50 32.00 16.59 0.03

* Compounds indicated (with an asterisk) are in units/mol creatinine; the others are mmol/mol creatinine.

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Following 70 days of Nystatin therapy, mean values for ten of the thirteen compounds decreased. The mean values for 3-oxoglutaric, VMA analog, and phenylcarboxylic acid compound increased following 70 days of Nystatin therapy.

The percent decrease for dihydroxyphenylpropionic was slight (11.8%) and was of marginal statistical significance. The percent change of mean values compared to baseline ranged from 39.9-87.9 for the remaining compounds with p values of the paired t-test ranging from 0.02-0.13. (The p value is the probability that the decreased values are due to chance.)

The marginal decrease in dihydroxyphenylpropionic acid led to the suspicion that this compound was not of fungal origin. Testing was performed on several patients at the attending physician’s request who had suspected or confirmed Clostridia infections and were treated with metronidazole (Flagyl). We tested several of these patients before and after metronidazole therapy and found a dramatic decrease in the concentration of this compound from baseline in these patients after drug therapy.

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Effect of Flagyl Therapy

As shown in Table 3, there is a dramatic decrease in the urinary concentration of dihydroxyphenylpropionic acid following the administration of standard doses of the antibiotic Flagyl. In all four patients, the concentrations of dihydroxyphenypropionic acid decreased 99% or more after two to three weeks on this drug. In the first patient in the above series, dihydroxyphenylpropionic acid rapidly increased following the cessation of Flagyl treatment. 

Table 3 - Effect of Flagyl Therapy on Urinary Excretion of Dihydroxyphenylprpionic Acid
Diagnosis & Sex Age Length of time (Days) from start of Flagyl Therapy Urinary dihydroxyphenylpropionic acid*
Autism, male 4 0 435
    6 184
    16 1
    21 (stopped Flagyl) 5
    24 2
    43 236
    93 274
Previous C. difficile infection and uncontrolled diarrhea, female 54 0 396
    13 1
Autism, male 3 0 549
    19 1
    30 3
Autism male 4 0 1362
    11 28
    15 3

*Measured in mmol/mol creatinine.

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Ratings of Clinical Improvement

Thirteen of the parents and/or teachers of six of the autistic children completed CARS evaluations both before and after therapy with Nystatin.

The mean CARS score prior to therapy was 37.3 (sd= 4.2 ) which is a rating of "severe autism" while the mean CARS score after therapy was 32.6 (sd=5.1), a rating of "mild to moderate autism."

This difference was rated as extremely significant by the paired t-test (p< .001).

CARS Score Diagnosis
15 - 30.0 Non-autistic
30.1 - 37.0 Mildly to moderately autistic
37.1 - 60 Severely autistic

Improvements cited by parents and teachers include decreased hyperactivity, more eye contact, increased vocalization , better sleep patterns, better concentration, increased imaginative play, reduced stereotypical behaviors (such as spinning objects), and better academic performance.

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Discussion

We were unaware of a possible role of metabolites of anaerobic bacteria in autism until our formal research study was complete. The overgrowth of anaerobic bacteria may be a complicating factor in the use of antifungal therapy for treatment of autism.

In several cases , concentrations of dihydroxyphenylpropionic acid increased following antifungal therapy. It is possible that anaerobic bacteria may have proliferated when yeasts and/or fungi were reduced in the microbial ecosystem.

If both yeast/fungal products and products of anaerobic bacteria are involved in the mechanism of autism, more complex antimicrobial therapies may be necessary to restore a balanced microbial ecology to the gastrointestinal tract, perhaps by "reseeding" the gastrointestinal tract with beneficial bacteria like Lactobacillus acidophilus. Such therapy has proved effective in the treatment of individuals with recurrent Clostridia difficile infections (14).

The marked decrease in dihydroxyphenylpropionic acid following treatment with Flagyl, an antibacterial agent with specificity toward anaerobic bacteria and no antifungal properties (15,16) is consistent with the production of this compound by one or more species of anaerobic bacteria.

Phenylpropionic acid and monohydroxyphenylpropionic acid which are very closely related biochemically to this compound are produced by several species of Clostridia (17 ). However we failed to identify this compound in multiple culture media samples in which multiple species of Clostridia were cultured.

Our failure to isolate dihydroxyphenylpropionic acid* from pure cultures of Clostridia could be due to multiple reasons:

  1. A precursor of the compound such as monohydroxyphenylpropionic acid may be produced by the anaerobic bacteria and then be converted to dihydroxyphenylpropionic acid by another microorganism and/or by human metabolism.
  2. The anaerobic bacteria producing this compound may be difficult to grow in vitro.
  3. The culture media for this organism may not provide the nutrients needed for the biosynthesis of this compound by this organism. We were very interested in a possible role in the mechanism for autism for this compound because it is related biochemically to the neurotransmitters dopamine and norepinephrine and because it is an inhibitor of dopamine decarboxylase, the enzyme responsible for the conversion of DOPA to dopamine (18).

* This compound has recently been definitiely identified as 3-(3-hydroxyphenyl)-3-hydroxy propionic acid.

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